All the optimal conditions were set up, where were they from?

One reasons could be they are from Contaminant Peaks from C18 Column Bleed. The contaminant ions, at M/Z 371, 445, and 519, when seen on the LC/MSD and LC/MSD Trap systems in positive ion mode, are believed to be C18 column bleed peaks of polysiloxane [O-Si(CH3)2-]n